Molecular evolution : computer analysis of protein and nucleic acid sequences / edited by Russell F. Doolittle.

San Diego ; London : Academic Press, [1990], ©1990.

xxix, 736 pages : illustrations ; cm.

Includes indexes.

Copy 1. Supplier/Donor: Wellcome Trust Sanger Institute.

Includes bibliographical references.

GenBank: Current status and future directions / Christian Burks ... [et al.] -- EMBL Data Library / Patricia Kahn and Graham Cameron -- Protein Sequence Database / Winona C. Barker, David G. George and Lois T. Hunt -- Cooperation between databases and scientific community / Borivoj Keil -- Rapid and sensitive sequence comparison with FASTP and FASTA / William R. Pearson -- Searching through sequence databases / Russell F. Doolittle -- Finding protein similarities with nucleotide sequence databases / Steven Henikoff, James C. Wallace and Joseph P. Brown -- Use of homology domains in sequence similarity detection / Charles B. Lawrence -- Profile analysis / Michael Gribskov, Roland Lothy and David Eisenberg -- Finding protein coding regions in genomic sequences / Rodger Staden -- Ancient patterns in nucleic acid sequences / John C. W. Shepherd -- Searching for patterns in protein and nucleic acid sequences / Rodger Staden -- Consensus patterns in DNA / Gary D. Stormo -- Consensus methods for DNA and protein sequence alignment / Michael S. Waterman and Robert Jones -- k-tuple frequency analysis: From intron/exon discrimination to T-cell epitope mapping / Jean-Michel Claverie, Isabelle Sauvaget and Lydie Bougueleret -- Splice junctions, branch point sites, and exons: Sequence statistics, identification, and applications to genome project / Periannan Senapathy, Marvin B. Shapiro and Nomi L. Harris -- Predicting optimal and suboptimal secondary structure for RNA / John A. Jaeger, Douglas H. Turner and Michael Zuker -- Detecting pseudoknots and other local base-pairing structures in RNA sequences / Hugo M. Martinez -- Computer modeling and display of RNA secondary and tertiary structures / Daniel Gautheret, François Major and Robert Cedergren --

Mutation data matrix and its uses / David G. George, Winona C. Barker and Lois T. Hunt -- Sensitivity comparison of protein amino acid sequences / Patrick Argos and Martin Vingron -- Three-way Needleman--Wunsch algorithm / Mitsuo Murata -- Progressive alignment and phylogenetic tree construction of protein sequences / Da-Fei Feng and Russell F. Doolittle -- Identification of significant sequence patterns in proteins / Samuel Karlin, B. Edwin Blaisdell and Volker Brendel -- Protein multiple sequence alignment and flexible pattern matching / Geoffrey J. Barton -- Genomic divergence through gene rearrangement / David Sankoff, Robert Cedergren and Yvon Abel -- Multiple sequence comparison / David J. Bacon and Wayne F. Anderson -- Simultaneous comparison of several sequences / Mauno Vihinen -- Hierarchical method to align large numbers of biological sequences / William R. Taylor -- Significance of protein sequence similarities / John F. Collins and Andrew F. W. Coulson -- Fast alignment of DNA and protein sequences / Gad M. Landau, Uzi Vishkin and Ruth Nussinov -- Statistical geometry on sequence space / Manfred Eigen and Ruthild Winkler-Oswatitsch -- Statistical methods for estimating sequence divergence / Takashi Gojobori, Etsuko N. Moriyama and Motoo Kimura -- Converting distance to time: Application to human evolution / Hirohisa Kishino and Masami Hasegawa-- Influence of base composition on quantitative estimates of gene evolution / Cecilia Saccone ... [et al.] -- Maximum likelihood methods / Naruya Saitou -- Maximum parsimony approach to construction of evolutionary trees from aligned homologous sequences / John Czelusniak ... [et al.] -- Phylogeny determination using dynamically weighted parsimony method / Patrick L. Williams and Walter M. Fitch-- Unified approach to alignment and phylogenies / Jotun Hein -- Statistical tests of molecular phylogenies / Wen-Hsiung Li and Manolo Gouy -- Nearest neighbor procedure for relating progressively aligned amino acid sequences / Russell F. Doolittle and Da-Fei Feng -- Phylogenetic relationships from three-dimensional protein structures / Mark S. Johnson, Andrej Sali and Tom L. Blundell.